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October 2023 Contents: Zeiss Axioscan 7 is ready to use Instrument demo by Discovery Echo Update for CosMx Spatial Molecular Imager Olympus FV4000 demo at Neuroscience 2023 Link: https://cores.utah.edu/wp-content/uploads/2023/11/CellImagingNewsletterOctober-2023.pdf August 2023 Contents: Personnel Changes in HSC Cell Imaging Core New instrument: NanoString CosMx Spatial Molecular Imager New instrument: Zeiss Axioscan 7 Nikon A1R back online New rate table for fiscal year 2024 Nikon Spinning Disk Confocal + TIRF microscope is ready to use Link: https://cores.utah.edu/wp-content/uploads/2023/11/CellImagingNewsletterAug2023.pdf May 2023 Contents: New Nikon Ring-TIRF/Spinning Disk Confocal Microscope SMBB Location closed Acknowledgement and Publication Collection Survey for new instrument acquisition Integrate an instrument into the core Free laser table in SMBB More new instruments are coming... Link: https://cores.utah.edu/wp-content/uploads/2023/11/CellImagingNewsletterMay2023.pdf March 2023 Contents: Zeiss Axioscan 7 is coming Slide scanner features Olympus all-in-one fluorescence microscope demo Hiring Future instruments Link: https://cores.utah.edu/wp-content/uploads/2023/11/CellImagingNewsletterMarch2023.pdf Publications Publications that cite the Cell Imaging Core 2024 July 2023 - June 2024   Anderl, W. J., Pearson, N., Converse, M. I., Yu, S. M., & Monson, K. L. (2023). Strain-induced collagen denaturation is rate dependent in failure of cerebral arteries. Acta Biomaterialia , 164 , 282–292. https://doi.org/10.1016/j.actbio.2023.04.032 Anderson, B., Blair, D., Huff, K., Wisniewski, J., Warner, K. S., & Kauser, K. (2023). Photochemical Modification of the Extracellular Matrix to Alter the Vascular Remodeling Process. Journal of Functional Biomaterials , 14 (12), Article 12. https://doi.org/10.3390/jfb14120566 Carey, C. M., Hollins, H. L., Schmid, A. V., & Gagnon, J. A. (2024). Distinct features of the regenerating heart uncovered through comparative single-cell profiling. Biology Open , 13 (4), bio060156. https://doi.org/10.1242/bio.060156 Carney, K. R., Khan, A. M., Stam, S., Samson, S. C., Mittal, N., Han, S. J., Bidone, T. C., & Mendoza, M. C. (2023a). Nascent adhesions shorten the period of lamellipodium protrusion through the Brownian ratchet mechanism. Molecular Biology of the Cell , mbc.E23-08-0314. https://doi.org/10.1091/mbc.E23-08-0314 Carney, K. R., Khan, A. M., Stam, S., Samson, S. C., Mittal, N., Han, S. J., Bidone, T. C., & Mendoza, M. C. (2023b). Nascent adhesions shorten the period of lamellipodium protrusion through the Brownian ratchet mechanism. Molecular Biology of the Cell , 34 (12), ar115. https://doi.org/10.1091/mbc.E23-08-0314 Casey, M. J., Chan, P. P., Li, Q., Jette, C. A., Kohler, M., Myers, B. R., & Stewart, R. A. (2024). A Simple and Scalable Zebrafish Model of Sonic Hedgehog Medulloblastoma (p. 2024.02.03.577834). bioRxiv. https://doi.org/10.1101/2024.02.03.577834 Chiola, S., Yang, J., Ullah, H. M. A., Napan, K., Huang, Q., Gamboa, N., Youssef, O., Colman, H., Cheshier, S. H., & Shcheglovitov, A. (2023). Transcriptional changes consistent with altered neuronal differentiation, angiogenesis, and tumor plasticity induced in human subpallial telencephalic organoid-glioblastoma chimeras (p. 2023.05.11.540229). bioRxiv. https://doi.org/10.1101/2023.05.11.540229 Collins, B. C., Shapiro, J. B., Scheib, M. M., Musci, R. V., Verma, M., & Kardon, G. (2024). Three-dimensional imaging studies in mice identify cellular dynamics of skeletal muscle regeneration. Developmental Cell . https://doi.org/10.1016/j.devcel.2024.03.017 de Hart, N. M. M. P., Petrocelli, J. J., Nicholson, R. J., Yee, E. M., van Onselen, L., Lang, M. J., Bourrant, P.-E., Ferrara, P. J., Bastian, E. D., Ward, L. S., Petersen, B. L., & Drummond, M. J. (2023). Dietary delivery of glycomacropeptide within the whey protein matrix is not effective in mitigating tissue ceramide deposition and obesity in high fat fed mice. Journal of Dairy Science . https://doi.org/10.3168/jds.2023-23914 de Hart, N. M. M. P., Petrocelli, J. J., Nicholson, R. J., Yee, E. M., van Onselen, L., Lang, M. J., Bourrant, P.-E., Ferrara, P. J., Bastian, E. D., Ward, L. S., Petersen, B. L., & Drummond, M. J. (2024). Dietary delivery of glycomacropeptide within the whey protein matrix is not effective in mitigating tissue ceramide deposition and obesity in mice fed a high-fat diet. Journal of Dairy Science , 107 (2), 669–682. https://doi.org/10.3168/jds.2023-23914 de Hart, N. MMP., Petrocelli, J. J., Nicholson, R. J., Yee, E. M., Ferrara, P. J., Bastian, E. D., Ward, L. S., Petersen, B. L., Summers, S. A., & Drummond, M. J. (2023). Palmitate-Induced Inflammation and Myotube Atrophy in C2C12 Cells Are Prevented by the Whey Bioactive Peptide, Glycomacropeptide. The Journal of Nutrition , 153 (10), 2915–2928. https://doi.org/10.1016/j.tjnut.2023.08.033 Digal, L., Samson, S., Stevens, M., Ghorai, A., Kim, H., Mifflin, M., Carney, K., Williamson, D., Um, S., Nagy, G., Oh, D.-C., Mendoza, M., & Roberts, A. (2023). Non-threaded isomers of sungsanpin and ulleungdin lasso peptides inhibit H1299 cancer cell migration [Preprint]. Chemistry. https://doi.org/10.26434/chemrxiv-2023-cfnrh Ellis, K. E., Bervoets, S., Smihula, H., Ganguly, I., Vigato, E., Auer, T. O., Benton, R., Litwin-Kumar, A., & Caron, S. J. C. (2023). Evolution of connectivity architecture in the Drosophila mushroom body (p. 2023.02.10.528036). bioRxiv. https://doi.org/10.1101/2023.02.10.528036 Fennel, Z. J., Bourrant, P.-E., Kurian, A. S., Petrocelli, J. J., de Hart, N. M. M. P., Yee, E. M., Boudina, S., Keirstead, H. S., Nistor, G., Greilach, S. A., Berchtold, N. C., Lane, T. E., & Drummond, M. J. (n.d.). Stem cell secretome treatment improves whole-body metabolism, reduces adiposity, and promotes skeletal muscle function in aged mice. Aging Cell , n/a (n/a), e14144. https://doi.org/10.1111/acel.14144 Figueroa, K. P., Gross, C., Atienza, E. B., Paul, S., Gandelman, M., Haack, T., Kakar, N., Sturm, M., Casadei, N., Admard, J., Park, J., Zühlke, C., Hellenbroich, Y., Pozojevic, J., Balachandran, S., Händler, K., Zittel, S., Timmann, D., Erdlenbruch, F., … Pulst, S. M. (2023). GGC expansion in ZFHX3 causes SCA4 and impairs autophagy (p. 2023.10.26.23297560). medRxiv. https://doi.org/10.1101/2023.10.26.23297560 Figueroa, K. P., Gross, C., Buena-Atienza, E., Paul, S., Gandelman, M., Kakar, N., Sturm, M., Casadei, N., Admard, J., Park, J., Zühlke, C., Hellenbroich, Y., Pozojevic, J., Balachandran, S., Händler, K., Zittel, S., Timmann, D., Erdlenbruch, F., Herrmann, L., … Pulst, S. M. (2024). A GGC-repeat expansion in ZFHX3 encoding polyglycine causes spinocerebellar ataxia type 4 and impairs autophagy. Nature Genetics , 1–10. https://doi.org/10.1038/s41588-024-01719-5 Guo, L., Jacob, S., Manne, B. K., Kolawole, E. M., Guo, S., Wang, X., Murray, D., Tugolukova, E. A., Portier, I., Kosaka, Y., Barba, C., Rondina, M. T., Evavold, B., Morley, C., Bhatlekar, S., & Bray, P. F. (2023). Actin-bundling protein L-plastin promotes megakaryocyte rigidity and dampens proplatelet formation. Haematologica , 109 (1), 331–336. https://doi.org/10.3324/haematol.2023.283016 Herstine, J. A., Chang, P.-K., Chornyy, S., Stevenson, T. J., Sunshine, A. C., Nokhrina, K., Rediger, J., Wentz, J., Vetter, T. A., Scholl, E., Holaway, C., Pyne, N. K., Bratasz, A., Yeoh, S., Flanigan, K. M., Bonkowsky, J. L., & Bradbury, A. M. (2024). Evaluation of safety and early efficacy of AAV gene therapy in mouse models of vanishing white matter disease. Molecular Therapy: The Journal of the American Society of Gene Therapy , S1525-0016(24)00212-0. https://doi.org/10.1016/j.ymthe.2024.03.034 Merrill, C. B., Titos, I., Pabon, M. A., Montgomery, A. B., Rodan, A. R., & Rothenfluh, A. (2024). Iterative assay for transposase-accessible chromatin by sequencing to isolate functionally relevant neuronal subtypes. Science Advances , 10 (13), eadi4393. https://doi.org/10.1126/sciadv.adi4393 Morales, J. C. F., Redfearn, C., Titus, M. A., & Roh-Johnson, M. (2024). Reduced PaxillinB localization to cell-substrate adhesions promotes cell migration in Dictyostelium (p. 2024.03.19.585764). bioRxiv. https://doi.org/10.1101/2024.03.19.585764 Moriwaki, M., Liu, L., James, E. R., Tolley, N., O’Connora, A. M., Emery, B., Aston, K. I., Campbell, R. A., & Welt, C. K. (2024). Heterozygous Eif4nif1 Stop Gain Mice Replicate the Primary Ovarian Insufficiency Phenotype in Women (p. 2024.04.09.588694). bioRxiv. https://doi.org/10.1101/2024.04.09.588694 Nwagbo, U., Parvez, S., Maschek, J. A., & Bernstein, P. S. (2024). Elovl4b knockout zebrafish as a model for ocular very-long-chain PUFA deficiency. Journal of Lipid Research , 65 (3). https://doi.org/10.1016/j.jlr.2024.100518 Paine, E. L., Skalicky, J. J., Whitby, F. G., Mackay, D. R., Ullman, K. S., Hill, C. P., & Sundquist, W. I. (2023). The Calpain-7 protease functions together with the ESCRT-III protein IST1 within the midbody to regulate the timing and completion of abscission. eLife , 12 , e84515. https://doi.org/10.7554/eLife.84515 Petrocelli, J. J., McKenzie, A. I., de Hart, N. M. M. P., Reidy, P. T., Mahmassani, Z. S., Keeble, A. R., Kaput, K. L., Wahl, M. P., Rondina, M. T., Marcus, R. L., Welt, C. K., Holland, W. L., Funai, K., Fry, C. S., & Drummond, M. J. (n.d.). Disuse-induced muscle fibrosis, cellular senescence, and senescence-associated secretory phenotype in older adults are alleviated during re-ambulation with metformin pre-treatment. Aging Cell , n/a (n/a), e13936. https://doi.org/10.1111/acel.13936 Scherer, S. D., Zhao, L., Butterfield, A. J., Yang, C.-H., Cortes-Sanchez, E., Guillen, K. P., Welm, B. E., & Welm, A. L. (2023). Breast cancer PDxO cultures for drug discovery and functional precision oncology. STAR Protocols , 4 (3), 102402. https://doi.org/10.1016/j.xpro.2023.102402 Smith, J. J., Valentino, T. R., Ablicki, A. H., Banerjee, R., Colligan, A. R., Eckert, D. M., Desjardins, G. A., & Diehl, K. L. (2024). A genetically-encoded fluorescent biosensor for visualization of acetyl-CoA in live cells (p. 2023.12.31.573774). bioRxiv. https://doi.org/10.1101/2023.12.31.573774 Van Scoyk, A. N., Antelope, O., Franzini, A., Ayer, D. E., Peterson, R. T., Pomicter, A. D., Owen, S. C., & Deininger, M. W. (2023). Bioluminescence Assay of Lysine Deacylase Sirtuin Activity. bioRxiv , 2023.08.10.552871. https://doi.org/10.1101/2023.08.10.552871 Verma, S., Giagnocavo, S. D., Curtin, M. C., Arumugam, M., Osburn-Staker, S. M., Wang, G., Atkinson, A., Nix, D. A., Lum, D. H., Cox, J. E., & Hilgendorf, K. I. (2024). Zinc Alpha-2-Glycoprotein (ZAG/AZGP1) secreted by triple-negative breast cancer promotes tumor microenvironment fibrosis (p. 2024.03.04.583349). bioRxiv. https://doi.org/10.1101/2024.03.04.583349 Walker, M. F., Zhang, J., Steiner, W., Ku, P.-I., Zhu, J.-F., Michaelson, Z., Yen, Y.-C., Lee, A., Long, A. B., Casey, M. J., Poddar, A., Nelson, I. B., Arveseth, C. D., Nagel, F., Clough, R., LaPotin, S., Kwan, K. M., Schulz, S., Stewart, R. A., … Myers, B. R. (2024). GRK2 Kinases in the Primary Cilium Initiate SMOOTHENED-PKA Signaling in the Hedgehog Cascade (p. 2023.05.10.540226). bioRxiv. https://doi.org/10.1101/2023.05.10.540226 Wallis, G. J., Bell, L. A., Wagner, J. N., Buxton, L., Balachandar, L., & Wilcox, K. S. (2024). Reactive microglia fail to respond to environmental damage signals in a viral-induced mouse model of temporal lobe epilepsy (p. 2024.03.06.583768). bioRxiv. https://doi.org/10.1101/2024.03.06.583768 2023 July 2022 - June 2023   Almanzar, D. E., Gordon, S. G., Bristow, C., Hamrick, A., von Diezmann, L., Liu, H., & Rog, O. (2023). Meiotic DNA exchanges in C. elegans are promoted by proximity to the synaptonemal complex. Life Science Alliance , 6 (4), e202301906. https://doi.org/10.26508/lsa.202301906 Anderl, W. J., Pearson, N., Converse, M. I., Yu, S. M., & Monson, K. L. (2023). Strain-induced collagen denaturation is rate dependent in failure of cerebral arteries. Acta Biomaterialia . https://doi.org/10.1016/j.actbio.2023.04.032 Ellis, K. E., Smihula, H., Ganguly, I., Vigato, E., Bervoets, S., Auer, T. O., Benton, R., Litwin-Kumar, A., & Caron, S. J. C. (2023). Evolution of connectivity architecture in the Drosophila mushroom body [Preprint]. Neuroscience. https://doi.org/10.1101/2023.02.10.528036 Eshima, H., Shahtout, J. L., Siripoksup, P., Pearson, M. J., Mahmassani, Z. S., Ferrara, P. J., Lyons, A. W., Maschek, J. A., Peterlin, A. D., Verkerke, A. R. P., Johnson, J. M., Salcedo, A., Petrocelli, J. J., Miranda, E. R., Anderson, E. J., Boudina, S., Ran, Q., Cox, J. E., Drummond, M. J., & Funai, K. (2023). Lipid hydroperoxides promote sarcopenia through carbonyl stress. eLife , 12 , e85289. https://doi.org/10.7554/eLife.85289 Espino-Sanchez, T. J., Wienkers, H., Marvin, R. G., Nalder, S.-A., García-Guerrero, A. E., VanNatta, P. E., Jami-Alahmadi, Y., Mixon Blackwell, A., Whitby, F. G., Wohlschlegel, J. A., Kieber-Emmons, M. T., Hill, C. P., & Sigala, P. A. (2023). Direct tests of cytochrome c and c1 functions in the electron transport chain of malaria parasites. Proceedings of the National Academy of Sciences of the United States of America , 120 (19), e2301047120. https://doi.org/10.1073/pnas.2301047120 Ferrara, P. J., Reidy, P. T., Petrocelli, J. J., Yee, E. M., Fix, D. K., Mahmassani, Z. S., Montgomery, J. A., McKenzie, A. I., de Hart, N. M. M. P., & Drummond, M. J. (2023). Global deletion of CCL2 has adverse impacts on recovery of skeletal muscle fiber size and function and is muscle-specific. Journal of Applied Physiology . https://doi.org/10.1152/japplphysiol.00444.2022 Hagen-Lillevik, S., Johnson, J., & Lai, K. (2022). Early postnatal alterations in follicular stress response and survival in a mouse model of Classic Galactosemia. Journal of Ovarian Research , 15 (1), 122. https://doi.org/10.1186/s13048-022-01049-2 Hagen-Lillevik, S., Johnson, J., Siddiqi, A., Persinger, J., Hale, G., & Lai, K. (2022). Harnessing the Power of Purple Sweet Potato Color and Myo-Inositol to Treat Classic Galactosemia. International Journal of Molecular Sciences , 23 (15), 8654. https://doi.org/10.3390/ijms23158654 He, Y., Anderson, B., Hu, Q., Hayes, R. B., Huff, K., Isaacson, J., Warner, K. S., Hauser, H., Greenberg, M., Chandra, V., Kauser, K., & Berceli, S. A. (2023). Photochemically Aided Arteriovenous Fistula Creation to Accelerate Fistula Maturation. International Journal of Molecular Sciences , 24 (8), Article 8. https://doi.org/10.3390/ijms24087571 Hoffman, L. M., Jensen, C. C., & Beckerle, M. C. (2022). Phosphorylation of the small heat shock protein HspB1 regulates cytoskeletal recruitment and cell motility. Molecular Biology of the Cell , 33 (11), ar100. https://doi.org/10.1091/mbc.E22-02-0057 Kidwell, C. U., Casalini, J. R., Pradeep, S., Scherer, S. D., Greiner, D., Bayik, D., Watson, D. C., Olson, G. S., Lathia, J. D., Johnson, J. S., Rutter, J., Welm, A. L., Zangle, T. A., & Roh-Johnson, M. (2023). Transferred mitochondria accumulate reactive oxygen species, promoting proliferation. eLife , 12 , e85494. https://doi.org/10.7554/eLife.85494 LaJoie, D., Turkmen, A. M., Mackay, D. R., Jensen, C. C., Aksenova, V., Niwa, M., Dasso, M., & Ullman, K. S. (2022). A role for Nup153 in nuclear assembly reveals differential requirements for targeting of nuclear envelope constituents. Molecular Biology of the Cell , 33 (13), ar117. https://doi.org/10.1091/mbc.E22-05-0189 Merrill, C. B., Titos, I., Pabon, M. A., Montgomery, A. B., Rodan, A. R., & Rothenfluh, A. (2023). Iterative assay for transposase-accessible chromatin by sequencing to isolate functionally relevant neuronal subtypes (p. 2023.04.14.536950). bioRxiv. https://doi.org/10.1101/2023.04.14.536950 Petrocelli, J. J., Hart, N. M. M. P. de, Lang, M. J., Yee, E. M., Ferrara, P. J., Fix, D. K., Chaix, A., Funai, K., & Drummond, M. J. (2023). Cellular senescence and disrupted proteostasis induced by myotube atrophy are prevented with low-dose metformin and leucine cocktail. Aging , 15 . https://doi.org/10.18632/aging.204600 Preston, A. J., Rogers, A., Sharp, M., Mitchell, G., Toruno, C., Barney, B. B., Donovan, L. N., Bly, J., Kennington, R., Payne, E., Iovino, A., Furukawa, G., Robinson, R., Shamloo, B., Buccilli, M., Anders, R., Eckstein, S., Fedak, E. A., Wright, T., … Abegglen, L. M. (2023). Elephant TP53-RETROGENE 9 induces transcription-independent apoptosis at the mitochondria. Cell Death Discovery , 9 (1), Article 1. https://doi.org/10.1038/s41420-023-01348-7 Rice, M. C., Little, J. H., Forrister, D. L., Machado, J., Clark, N. L., & Gagnon, J. A. (2023). Gadusol is a maternally provided sunscreen that protects fish embryos from DNA damage [Preprint]. Developmental Biology. https://doi.org/10.1101/2023.01.30.526370 Rush, C. M., Blanchard, Z., Polaski, J. T., Osborne, K. S., Osby, K., Vahrenkamp, J. M., Yang, C.-H., Lum, D. H., Hagan, C. R., Leslie, K. K., Pufall, M. A., Thiel, K. W., & Gertz, J. (2022). Characterization of HCI-EC-23 a novel estrogen- and progesterone-responsive endometrial cancer cell line. Scientific Reports , 12 (1), Article 1. https://doi.org/10.1038/s41598-022-24211-8 Sefton, E. M., Gallardo, M., Tobin, C. E., Collins, B. C., Colasanto, M. P., Merrell, A. J., & Kardon, G. (2022). Fibroblast-derived Hgf controls recruitment and expansion of muscle during morphogenesis of the mammalian diaphragm. eLife , 11 , e74592. https://doi.org/10.7554/eLife.74592 Simeone, C. A., Wilkerson, J. L., Poss, A. M., Banks, J. A., Varre, J. V., Guevara, J. L., Hernandez, E. J., Gorsi, B., Atkinson, D. L., Turapov, T., Frodsham, S. G., Morales, J. C. F., O’Neil, K., Moore, B., Yandell, M., Summers, S. A., Krolewski, A. S., Holland, W. L., & Pezzolesi, M. G. (2022). A dominant negative ADIPOQ mutation in a diabetic family with renal disease, hypoadiponectinemia, and hyperceramidemia. Npj Genomic Medicine , 7 (1), Article 1. https://doi.org/10.1038/s41525-022-00314-z Smith, M. A., Blankman, E., Jensen, C. C., Hoffman, L. M., Ullman, K. S., & Beckerle, M. C. (2022). Nuclear pore complexes concentrate on Actin/LINC/Lamin nuclear lines in response to mechanical stress in a SUN1 dependent manner. Heliyon , 8 (12), e12147. https://doi.org/10.1016/j.heliyon.2022.e12147 Stover, J. D., Trone, M. A., Lawrence, B., & Bowles, R. D. (n.d.). Multiplex epigenome editing of ion channel expression in nociceptive neurons abolished degenerative IVD-conditioned media-induced mechanical sensitivity. JOR SPINE , n/a (n/a), e1253. https://doi.org/10.1002/jsp2.1253 Su, G., Farhat, R., Laxman, A. K., Chapman-Natewa, K., Nelson, I. E., & Chan, O. (2023). Astrocyte glycogen is a major source of hypothalamic lactate in rats with recurrent hypoglycemia. Diabetes , db220902. https://doi.org/10.2337/db22-0902 Wang, Y., Chiola, S., Yang, G., Russell, C., Armstrong, C. J., Wu, Y., Spampanato, J., Tarboton, P., Ullah, H. M. A., Edgar, N. U., Chang, A. N., Harmin, D. A., Bocchi, V. D., Vezzoli, E., Besusso, D., Cui, J., Cattaneo, E., Kubanek, J., & Shcheglovitov, A. (2022). Modeling human telencephalic development and autism-associated SHANK3 deficiency using organoids generated from single neural rosettes. Nature Communications , 13 (1), Article 1. https://doi.org/10.1038/s41467-022-33364-z Warde, K. M., Smith, L. J., Liu, L., Stubben, C. J., Lohman, B. K., Willett, P. W., Ammer, J. L., Castaneda-Hernandez, G., Imodoye, S. O., Zhang, C., Jones, K. D., Converso-Baran, K., Ekiz, H. A., Barry, M., Clay, M. R., Kiseljak-Vassiliades, K., Giordano, T. J., Hammer, G. D., & Basham, K. J. (2023). Senescence-induced immune remodeling facilitates metastatic adrenal cancer in a sex-dimorphic manner. 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